Alternative to LSF
Hello, I'm trying to compute me own mask and I faced problem that I need to use command ~bsub that is belongs to LSF platform. We don't have LSF problem, and out genomes are very short. Is there any...
View ArticleHaplotypeCaller: -G Standard -G AS_Standard
Hi everyone, I am running HaplotypeCAller of GATK-3.6, My command-line is: java -Xmx20g -jar ./GATK-3.6/GenomeAnalysisTK.jar -T HaplotypeCaller \ -nct 30 -rf BadCigar -log $LOG/file.log \ -R $REF \ -I...
View ArticleError running CNV module using latest version 2.0.1665
Hello, I'm running the CNVDiscoveryPipeline using the latest version of GenomeSTrip 2.0.1665. And I'm getting the following error: INFO 20:00:36,839 QCommandLine - Scripting CNVDiscoveryPipeline INFO...
View ArticleError running CNV module using latest version 2.0.1665
Hello, I'm running the CNVDiscoveryPipeline using the latest version of GenomeSTrip 2.0.1665. And I'm getting the following error: INFO 20:00:36,839 QCommandLine - Scripting CNVDiscoveryPipeline INFO...
View ArticleCNV module VS SV module: very tiny overlap
Hello, I'm running GenomeStrip 2.0.1592 both SV and CNV modules on the same sample NA12878. But I'm getting a very tiny overlap between the "Pass" Calls. Range SVcalls CNVcalls Overlap 1 0 0 0 300 0 0...
View ArticleSV Discovery error: exception processing cluster
Hello, I am new to using GenomeSTRiP. I successfully installed the program and completed the install test. With my own data, I have successfully completed the SVPreprocessing step. However, when I get...
View ArticleTrying to fix genomestrip/ ComputeInsertSizeHistogramsWalker "Cannot...
Hi, I'm currently trying to analyse a bunch of WGS data that have been generated without the LB tag in the read group. The best thing would be to submit a pull request on the genomestrip code but as...
View ArticleUsing Genome STRiP with SLURM instead of LSF
I'm trying to use the most recent release of Genome STRiP for CNV calling, but my cluster doesn't use LSF. As a result, I'm getting following error all over the place: ERROR 17:15:10,412 QGraph -...
View ArticleRunning GenomeStrip from installtest
Hello, I'm trying to run GenomeStrip using the installtest folder files and I'm getting the following error: "java.lang.UnsupportedClassVersionError: org/broadinstitute/sv/apps/SVToolkitInfo :...
View ArticleTrouble Downloading GenomeStrip?
Hello, I can't seem to download GenomeStrip from the website: http://software.broadinstitute.org/software/genomestrip/download-genome-strip The issue is the registration prior to downloading, when I...
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View ArticleGenomestrip CNV QC plots
Hi @bhandsaker I'm trying to figure out how to best to filter my CNVs (from the CNV genotyping pipeline, then with the R script). I've attached graphs of the QC metrics for each event across the...
View Article성산출장샵 （까툑Dio37）성산콜걸...
성산출장샵 （까툑Dio37）성산콜걸 【dio21，net】⊙성산여대생출장만남▶성산출장서비스ン성산출장안마ヲ성산키스방◀성산유흥업소☞성산출장맛사지☎성산핸플
View Article대전외국인출장샵추천 《ka툑Dio34》대전콜걸 대전출장아가씨△대전출장샵▲대전출장안마＆대전출장업소▷대전출장대행♧대전출장만남㉿대전오피 대전키스방
대전외국인출장샵추천 《ka툑Dio34》대전콜걸 대전출장아가씨△대전출장샵▲대전출장안마＆대전출장업소▷대전출장대행♧대전출장만남㉿대전오피 대전키스방 대전외국인출장샵추천 《ka툑Dio34》대전콜걸 대전출장아가씨△대전출장샵▲대전출장안마＆대전출장업소▷대전출장대행♧대전출장만남㉿대전오피 대전키스방 대전외국인출장샵추천 《ka툑Dio34》대전콜걸...
View Article(κλ)구로출장샵【카톡AKA27】pxp8.com구로모텔콜걸 출장안마 구로출장만남구로외국인출장m구로출장후기 구로출장아가씨 구로출장마사지...
(κλ)구로출장샵【카톡AKA27】pxp8.com구로모텔콜걸 출장안마 구로출장만남<,,>구로외국인출장m구로출장후기 구로출장아가씨 구로출장마사지 구로애인대행(κλ)구로출장샵【카톡AKA27】pxp8.com구로모텔콜걸 출장안마 구로출장만남<,,>구로외국인출장m구로출장후기 구로출장아가씨 구로출장마사지...
View ArticleAlternative to LSF
Hello, I'm trying to compute me own mask and I faced problem that I need to use command ~bsub that is belongs to LSF platform. We don't have LSF problem, and out genomes are very short. Is there any...
View ArticleError while running Catvariants " class main"
I am trying combine variants of different chromosomes with same number of samples with following command: REF=reference.fa GATK4=/softwares/GATK-3.4-46/GenomeAnalysisTK.jar java -cp...
View Article≮办邦德大学毕业证BU毕业证成绩单≯Q微741003700留学生买澳洲BU毕业证文凭学历证书|学历认证使馆认证回国人员证明Bond University
拿不到文凭？【Q/微:74100 3700 】专业为留学生办理毕业证、成绩单、使馆留学回国人员证明、教育部学历学位认证、录取通知书、Offer、在读证明、雅思托福成绩单、网上存档永久可！ √鸿途教育为广大留学生提供以下服务： 1、真实教育部学历学位认证，教育部留学服务中心永久存档可查。 2、毕业证、成绩单等全套材料，从防伪到印刷，从水印到钢印烫金，与学校100%相同。...
View Article≮办查尔斯达尔文大学毕业证CDU毕业证成绩单≯Q微741003700留学生买澳洲CDU毕业证文凭学历证书|学历认证使馆认证回国人员证明Charles...
拿不到文凭？【Q/微:74100 3700 】专业为留学生办理毕业证、成绩单、使馆留学回国人员证明、教育部学历学位认证、录取通知书、Offer、在读证明、雅思托福成绩单、网上存档永久可！ √鸿途教育为广大留学生提供以下服务： 1、真实教育部学历学位认证，教育部留学服务中心永久存档可查。 2、毕业证、成绩单等全套材料，从防伪到印刷，从水印到钢印烫金，与学校100%相同。...
View Article≮办查尔斯特大学毕业证CSU毕业证成绩单≯Q微741003700留学生买澳洲CSU毕业证文凭学历证书|学历认证使馆认证回国人员证明 Charles...
拿不到文凭？【Q/微:74100 3700 】专业为留学生办理毕业证、成绩单、使馆留学回国人员证明、教育部学历学位认证、录取通知书、Offer、在读证明、雅思托福成绩单、网上存档永久可！ √鸿途教育为广大留学生提供以下服务： 1、真实教育部学历学位认证，教育部留学服务中心永久存档可查。 2、毕业证、成绩单等全套材料，从防伪到印刷，从水印到钢印烫金，与学校100%相同。...
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